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      Methodological challenges and analytic opportunities for modeling and interpreting Big Healthcare Data

      review-article
      GigaScience
      BioMed Central
      Big data, Analytics, Modeling, Information technology, Cloud services, Processing, Visualization, Workflows

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          Abstract

          Managing, processing and understanding big healthcare data is challenging, costly and demanding. Without a robust fundamental theory for representation, analysis and inference, a roadmap for uniform handling and analyzing of such complex data remains elusive. In this article, we outline various big data challenges, opportunities, modeling methods and software techniques for blending complex healthcare data, advanced analytic tools, and distributed scientific computing. Using imaging, genetic and healthcare data we provide examples of processing heterogeneous datasets using distributed cloud services, automated and semi-automated classification techniques, and open-science protocols. Despite substantial advances, new innovative technologies need to be developed that enhance, scale and optimize the management and processing of large, complex and heterogeneous data. Stakeholder investments in data acquisition, research and development, computational infrastructure and education will be critical to realize the huge potential of big data, to reap the expected information benefits and to build lasting knowledge assets. Multi-faceted proprietary, open-source, and community developments will be essential to enable broad, reliable, sustainable and efficient data-driven discovery and analytics. Big data will affect every sector of the economy and their hallmark will be ‘team science’.

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          MapReduce

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            Deep Learning in Neural Networks: An Overview

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            In recent years, deep artificial neural networks (including recurrent ones) have won numerous contests in pattern recognition and machine learning. This historical survey compactly summarises relevant work, much of it from the previous millennium. Shallow and deep learners are distinguished by the depth of their credit assignment paths, which are chains of possibly learnable, causal links between actions and effects. I review deep supervised learning (also recapitulating the history of backpropagation), unsupervised learning, reinforcement learning & evolutionary computation, and indirect search for short programs encoding deep and large networks.
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              Support vector machines

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                Author and article information

                Contributors
                statistics@umich.edu
                Journal
                Gigascience
                Gigascience
                GigaScience
                BioMed Central (London )
                2047-217X
                25 February 2016
                25 February 2016
                2016
                : 5
                : 12
                Affiliations
                Statistics Online Computational Resource (SOCR), Health Behavior and Biological Sciences, Michigan Institute for Data Science, University of Michigan, 426 N. Ingalls, Ann Arbor, MI 49109 USA
                Article
                117
                10.1186/s13742-016-0117-6
                4766610
                26918190
                1039c6c9-92e3-4089-9156-75b18f2dabe8
                © Dinov. 2016

                Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License ( http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver ( http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

                History
                : 8 September 2015
                : 9 February 2016
                Funding
                Funded by: FundRef http://dx.doi.org/10.13039/100000002, National Institutes of Health (US);
                Award ID: NR015331
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/100000002, National Institutes of Health (US);
                Award ID: EB020406
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/100000002, National Institutes of Health (US);
                Award ID: NS091856
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/100000002, National Institutes of Health (US);
                Award ID: DK089503
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/100000001, National Science Foundation (US);
                Award ID: 1416953
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/100000001, National Science Foundation (US);
                Award ID: 0716055
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/100000001, National Science Foundation (US);
                Award ID: 1023115
                Award Recipient :
                Categories
                Review
                Custom metadata
                © The Author(s) 2016

                big data,analytics,modeling,information technology,cloud services,processing,visualization,workflows

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